PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT2G42150.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family MYB_related
Protein Properties Length: 631aa    MW: 70445.8 Da    PI: 8.6052
Description DNA-binding bromodomain-containing protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT2G42150.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.61.4e-131366148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48
                     ++ W+t+E++ll++av+++G+++W++++++++        +t+  c++++++++
      AT2G42150.1 13 KQTWSTWEELLLACAVHRHGTESWNSVSAEIQklspnlCSLTASACRHKYFDLK 66
                     789*****************************9999997889999*****9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.1E-71268IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-51264IPR009057Homeodomain-like
SuperFamilySSF466891.88E-51368IPR009057Homeodomain-like
PfamPF002495.2E-141366IPR001005SANT/Myb domain
CDDcd001671.78E-51566No hitNo description
SMARTSM002972.9E-23265374IPR001487Bromodomain
SuperFamilySSF473701.31E-17270372IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.5E-14270371IPR001487Bromodomain
CDDcd043692.40E-16276369No hitNo description
PfamPF004391.9E-10280359IPR001487Bromodomain
PROSITE profilePS5001411.643284355IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000037anatomyshoot apex
PO:0000230anatomyinflorescence meristem
PO:0008019anatomyleaf lamina base
PO:0009006anatomyshoot system
PO:0009009anatomyplant embryo
PO:0009010anatomyseed
PO:0009025anatomyvascular leaf
PO:0009030anatomycarpel
PO:0009046anatomyflower
PO:0020030anatomycotyledon
PO:0020038anatomypetiole
PO:0025022anatomycollective leaf structure
PO:0001078developmental stageplant embryo cotyledonary stage
PO:0001081developmental stagemature plant embryo stage
PO:0004507developmental stageplant embryo bilateral stage
PO:0007115developmental stageLP.04 four leaves visible stage
PO:0007611developmental stagepetal differentiation and expansion stage
Sequence ? help Back to Top
Protein Sequence    Length: 631 aa     Download sequence    Send to blast
MAKPENDVTL TEKQTWSTWE ELLLACAVHR HGTESWNSVS AEIQKLSPNL CSLTASACRH  60
KYFDLKSRFT QELPVPESVA EISTAPWLEE LRKLRVDELR REVEQYDLSI STLQSKVKQL  120
EEEREMSFIK PDTETENLDL ERKKERSDSG EPVPNPPVQL MNETISPDPK EIGSENTERE  180
EEMAGSGGGE SKLAGEDSCR GSCESVEKEP TTNSERVEPV SVTELIESED GASRGEEITS  240
DVQSSASLPR KGTSEPDKED QSPTSAKDFT VESQPLISFV EILLSHPCGS HFSRRLERQE  300
TIEYGTIIRE HVDFEIIRKR VEGGLYKSWR INFFRDLLLL VNNARVFYHR GSSEFKFAEQ  360
LHQLVKKQMT TTLKGLSNRD EISISPPKEE VVAIPSSKPV SSKPRMSVPN IVACRKRSAL  420
AAKPLLLLPP GPDKKAKKTD HVVDYDEKPV SDKDGEASGK DDDDSLIVKI MTRGRTSSTG  480
KVANRNDKNR DSSLNVDDSK DKVKKTDEEK KGGSKKKRAA SFLRRMKVGS SDDTLKRSSA  540
ADSSTTGKGG GAEQRKNNSN KADNKKTPIP KIRQTNKKAS PVKRSNNGRN SEREAAPSSS  600
SYPILAKRSR DAGEKEEASS YSPRLKKRAR R
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1532537DTLKRS
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO795736270.0
Genevisible267631_at0.0
Expression AtlasAT2G42150-
AtGenExpressAT2G42150-
ATTED-IIAT2G42150-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT2G42150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT2G42150
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY4616060.0AY461606.1 Arabidopsis thaliana At2g42150 mRNA, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_181745.10.0DNA-binding bromodomain-containing protein
TrEMBLO485230.0O48523_ARATH; DNA-binding bromodomain-containing protein
STRINGAT2G42150.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65302539
Representative plantOGRP38051123
Publications ? help Back to Top
  1. Pandey R, et al.
    Analysis of histone acetyltransferase and histone deacetylase families of Arabidopsis thaliana suggests functional diversification of chromatin modification among multicellular eukaryotes.
    Nucleic Acids Res., 2002. 30(23): p. 5036-55
    [PMID:12466527]